SNP Profiles matching ICS 8

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	CT	GG
1._RUQ_1585	_	AA	GG	CC	_	_	_	TT	_	_	_	_	CT	GG
2._RUQ_1460	_	AA	GG	CC	_	_	_	TT	_	_	_	_	CT	GG
3._ICS_8	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	CT	GG
4._ICS_8	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	CT	GG
5._ICS_8	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	CT	GG
6._ICS_8	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	CT	GG
7._ICS_8	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	CT	GG
8._ICS_8	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	CT	GG
9._GC-08-054-1-65	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	CT	GG
10._GC-08-054-1-65	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	CT	GG
11._GC-08-054-1-65	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	CT	GG
12._GC-08-054-1-65	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	CT	GG
13._GC-08-054-1-65	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	CT	GG
14._GC-08-054-1-65	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	CT	GG
15._NA_95	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	CT	GG
16._NA_95	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	CT	GG
17._GC-01-122-6-19	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	CT	GG
18._GC-08-168-4-11	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	CT	GG
19._ICS_8	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	_	GG
20._ICS_8	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	CT	GG
21._GC-08-054-1-65	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	_	GG
22._GC-08-054-1-65	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	CT	GG
23._PA_81_[PER]	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	CT	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	AC
1._RUQ_1585	_	_	_	_	CC	GG	GG	_	TT	CC	CC	TT	TT	CC
2._RUQ_1460	_	_	_	_	CC	GG	GG	_	TT	CC	CC	TT	TT	CC
3._ICS_8	CT	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC
4._ICS_8	CT	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC
5._ICS_8	CT	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC
6._ICS_8	CT	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC
7._ICS_8	CT	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC
8._ICS_8	CT	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC
9._GC-08-054-1-65	CT	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC
10._GC-08-054-1-65	CT	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC
11._GC-08-054-1-65	CT	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC
12._GC-08-054-1-65	CT	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC
13._GC-08-054-1-65	CT	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC
14._GC-08-054-1-65	CT	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC
15._NA_95	CT	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC
16._NA_95	CT	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC
17._GC-01-122-6-19	CT	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC
18._GC-08-168-4-11	CT	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC
19._ICS_8	CT	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC
20._ICS_8	CT	AA	GG	TT	_	GG	GG	GG	TT	CC	CC	TT	TT	CC
21._GC-08-054-1-65	CT	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC
22._GC-08-054-1-65	CT	AA	GG	TT	_	GG	GG	GG	TT	CC	CC	TT	TT	CC
23._PA_81_[PER]	CT	AA	GG	TT	CC	GG	-	GG	TT	CC	CC	TT	TT	CC

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	AA	AG	AA	CC	AG	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
1._RUQ_1585	AA	_	-	CC	AG	AC	CT	GT	AC	_	_	X_X	X_X	X_X
2._RUQ_1460	AA	_	-	CC	AG	AC	CT	GT	AC	_	_	X_X	X_X	X_X
3._ICS_8	AA	GG	AA	CC	AG	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
4._ICS_8	AA	GG	AA	CC	AG	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
5._ICS_8	AA	GG	AA	CC	AG	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
6._ICS_8	AA	GG	AA	CC	AG	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
7._ICS_8	AA	GG	AA	CC	AG	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
8._ICS_8	AA	GG	AA	CC	AG	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
9._GC-08-054-1-65	AA	GG	AA	CC	AG	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
10._GC-08-054-1-65	AA	GG	AA	CC	AG	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
11._GC-08-054-1-65	AA	GG	AA	CC	AG	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
12._GC-08-054-1-65	AA	GG	AA	CC	AG	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
13._GC-08-054-1-65	AA	GG	AA	CC	AG	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
14._GC-08-054-1-65	AA	GG	AA	CC	AG	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
15._NA_95	AA	GG	AA	CC	AG	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
16._NA_95	AA	GG	AA	CC	AG	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
17._GC-01-122-6-19	AA	GG	AA	CC	AG	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
18._GC-08-168-4-11	AA	GG	AA	CC	AG	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
19._ICS_8	AA	GG	AA	CC	AG	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
20._ICS_8	AA	GG	AA	CC	AG	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
21._GC-08-054-1-65	AA	GG	AA	CC	AG	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
22._GC-08-054-1-65	AA	GG	AA	CC	AG	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
23._PA_81_[PER]	AA	GG	AA	CC	AG	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X

Input profile: ICS_8

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: San Juan Block5

Dapeng Zhang, 2016

1._CRU_104 RUQ_1585

97.7 %
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

2._CRU_111 RUQ_1460

97.7 %
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

3._ICS_8

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8165 3 > FP

Dapeng Zhang, 2016

4._ICS_8

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8165 2 > FP

Dapeng Zhang, 2016

5._ICS_8

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8165 9

Dapeng Zhang, 2016

6._ICS_8

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8165 8

Dapeng Zhang, 2016

7._ICS_8

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8165 7

Dapeng Zhang, 2016

8._ICS_8

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8165 6

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

9._ICS_8 GC-08-054-1-65

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

10._ICS_8 GC-08-054-1-65

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP3

11._ICS_8 GC-08-054-1-65

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

12._ICS_8 GC-08-054-1-65

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

13._ICS_8 GC-08-054-1-65

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

14._ICS_8 GC-08-054-1-65

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

15._NA_95

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8411 3

Dapeng Zhang, 2016

16._NA_95

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1619 9 > FP

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

17._NA_95 GC-01-122-6-19

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9 > FP2

18._NA_95 GC-08-168-4-11

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

19._ICS_8

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8165 1 > FP

Dapeng Zhang, 2016

20._ICS_8

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8165 10

Dapeng Zhang, 2016

21._ICS_8 GC-08-054-1-65

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

22._ICS_8 GC-08-054-1-65

97.4 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

23._PA_81_[PER]

97.4 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A F527 T2

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25